Dear cnsbb, How to use pre-compiled linux(32-bit; with bash shell) binaries to get the compilers to work in CNS ver 1.21. Please see below the complete process...
1817
Axel Brunger
brunger@...
Jun 1, 2009 2:45 pm
Don't run the install script for the precompiled version as as explicitly stated in the download instructions and in the Installation instructions on the CNS...
1818
Stella Joe
stella.joe13
Jun 2, 2009 10:45 am
Dear cnsbb, after editing the cns_solve_env file as follows: setenv CNS_SOLVE '/softwares/cns/cns_solve_1.21' setenv CNS_SOLVE $CNS_SOLVE didnot run the...
1819
Justin Lecher
j.lecher@...
Jun 2, 2009 12:06 pm
... setenv is specific for csh or tcsh. You have to use export at bash: export CNS_SOLVE='/softwares/cns/cns_solve_1.21' justin -- Justin Lecher Institute for...
1820
Iain Kerr
iain_d_kerr
Jun 2, 2009 3:41 pm
Stella, Under the bash shell you use 'export' and not 'setenv' (C shell command) to set environmental variables: export=CNS_SOLVE...
1821
Iain Kerr
iain_d_kerr
Jun 4, 2009 5:13 am
Yeah, misplaced '='... Clearly wasn't awake enough then as you'd already replied anyway !...
1822
Roberto Kopke Salinas
rkopke_1972
Jun 4, 2009 8:40 pm
Dear All, I have been doing calculations with Haddock that uses CNS. But I get the series of error messages below when the program reads generate.inp. The...
1823
Christian Biertuempfel
cbiertue
Jun 4, 2009 9:11 pm
Hi Roberto, Check if you forgot a " in your input file. Cheers, christian ... _______________________________________________________________________ Dr....
1824
jonathanwesleystone
jonathanwesl...
Jun 11, 2009 5:53 am
Hello, I am trying to install some CNS Solve 1.2 for a fellow researcher and have run into a compile problem. `uname -a` is: Linux uridine 2.6.9-5.ELsmp #1 SMP...
1825
Julie Fisher
j.fisher@...
Jun 15, 2009 3:17 pm
Dear All, Have any of you used cns-solve with a spacer-9 system connecting two DNA strands? The spacer-9 system is supplied as a phosphoramidite as shown; ...
1826
Shabeir
shabeir...
Jun 16, 2009 8:50 am
Dear cnsbb,    I meet two problems in Distance restraints and Dihedral angle restraints when running CNS.   %NOESET-ERR: error in selection - no atoms...
1827
Lukacs, Christine
christine.lukacs@...
Jun 17, 2009 6:33 pm
Hi- I have a bromine in my ligand, and it always refines with a much higher b-factor than the rest of the ligand, and correspondingly, a bunch of negative...
1828
ramasreed
Jul 10, 2009 6:42 am
Hi All, I am trying to install CNS_solve_1.2 on my suse11.1 linux I have configure CNS But when i type the command of : make install i m not able to install I...
1829
sylvie nonin-lecomte
sylvie.nonin@...
Jul 10, 2009 9:13 am
Hi all, I have downloaded the precompiled version of cnssolve 1.21 for mac intel. I have a macbookpro with an intel core 2 duo running on osx 10.5.7. I have...
1830
sylvie nonin-lecomte
sylvie.nonin@...
Jul 10, 2009 1:34 pm
Hi all, we have solved the problem. In the cns_solve_env file, I removed the line : if ( ! $?CNS_ARCH ) setenv CNS_ARCH '$CNS_SOLVE/bin/getarch' and replaced...
1831
wsyoung@...
wsyoung...
Jul 14, 2009 7:27 am
Since our recent upgrade of the lustre filesystem on our cluster to version 1.8, we have been having issues with cns. Specifically the command 'set...
1832
JingHua LU
lujinghua_2000
Jul 31, 2009 11:44 am
Dear ALL: Â Â Â Â I got a problem to run density modification in CNS. Â Â Â Â Â Would you give me some troubleshooting? Â Â Â Â Â Â Â The following is what...
1833
Ed Pozharski
pozharski
Aug 2, 2009 5:10 am
It's impossible to say what exactly went wrong - please post the define() part of your density_modify.inp - apparently one or more selections are malformed. ...
1834
Xie Jiabao
xie.jiabao@...
Aug 3, 2009 5:39 am
Dear all, I am trying to carry out simulated annealing, energy minimization and Bfactor refinement of my model using refine.inp in cns1.21. The protein model...
1835
Axel Brunger
brunger@...
Aug 3, 2009 1:37 pm
Please try one of the pre-compiled CNS binaries for linux or Mac OS X. The fact that the program is stuck without error message may be due to some compiler ...
1836
Ed Pozharski
pozharski
Aug 3, 2009 3:04 pm
Is it stuck or it just quits (try "ps -Af | grep cns_solve" to see if cns_solve is still running). If it quits, it may be related to the stacksize limitation,...
1837
Jack Tanner
tannerjj@...
Aug 3, 2009 3:15 pm
I wanted to let everyone know that there appears to be a typo in difference_distance.inp for v1.1 and v1.2. The following lines evaluate...
1838
Axel Brunger
brunger@...
Aug 3, 2009 3:23 pm
Thanks! I'll fix this in the next release. Axel Brunger ... Axel T. Brunger Investigator, Howard Hughes Medical Institute Professor of Molecular and Cellular...
1839
ashok kumar
ashok_gju2005
Aug 22, 2009 9:38 am
Hello  I am a research scholar but i dont have academic ID and i want to install the CNS suite to my system, how can i get the license in absence of academic...
1840
hussaingps@...
hussaingps
Aug 24, 2009 8:49 pm
Dear all, I'm facing problem in model_stats step . I 'm working with protein kinase what is the format that we need to give in cns/inputs edit+help, what are...
1841
bschmidt@...
Sep 29, 2009 7:04 pm
Hello all, I am trying to make a composite-SA-omit map. My space group is P21221, and I specify that in my .inp file. However, when I try to run the job, it...
1842
Phil Jeffrey
pjeffrey@...
Sep 30, 2009 1:59 am
Bryan, CNS holds the space group information in the file: $CNS_XTALLIB/spacegroup.lib which on my system is: ...
1843
Lukacs, Christine
christine.lukacs@...
Oct 1, 2009 2:31 pm
Hi - I have a dataset that seems to be perfectly twinned - 4 times. Long story short: Apparent space group of P6122 gives MR solution, one molecule in AU,...
1844
Kay Diederichs
kay.diederichs@...
Oct 1, 2009 3:15 pm
... Christine, I'd say you can consider yourself lucky that the latest version of refmac5 can deal with tetartohedral twinning which you seem to have. AFAICT...
1845
Jonathan Elegheert
jonathan.ele...
Oct 2, 2009 5:39 pm
Hi Christine, maybe this is worth looking at if you want to solve it through CNS; /Acta Cryst./ (2005). D*61*, 613-621 /Escherichia coli/ MltA: MAD phasing and...
