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nmr_sparky

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Group Information

  • Members: 374
  • Category: Chemistry
  • Founded: Jul 8, 2005
  • Language: English
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Activity within 7 days:

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Description

This little group is opened up to facilitate experience exchaning and discussing for sparky user. Sparky, a NMR spectrum peakpicking, assignment software, can be download at ucsf(http://www.cgl.ucsf.edu/home/sparky/).

The process from NMR data to the final structure calculation includes the following components. The raw data(fid or ser)-->use "NMRPipe" to do the Fourier transform et al.-->output to "Sparky" ucsf format, and do peak picking, volumn intergating et al-->output the noe peak volumn infomation to ARIA to do the structure calculation, and if you are lucky, the final structure can be got.

The nmrpipe's group "nmrpipe", the aria's group "aria-discuss" can be found in Yahoo-Groups too. I recommend you guys whose major is biomolecular NMR join these groups.

Most Recent Messages

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Strip plots with HNCA and HNCO
Hi, when I use the sp command with HNCO (and HNCACO) and HNCA (and HNCOCA) the strips are not contiguous since the C13 chemical shifts are very different. Is
Posted - Sat May 18, 2013 11:30 am
Marco Sette
m77it
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Re: Regarding processing problem of 2D TOCSY ucsf in sparky
Hi, His problem was in the nmrPipe processing script and has been resolved. According to me (after having seen his data), what you have suggested would not
Posted - Mon May 13, 2013 5:28 pm
Mandar Naik
mantrinaik
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Re: Regarding processing problem of 2D TOCSY ucsf in sparky
Hello Pancham, You can apply a chemical shift correction to your TOCSY spectrum using your ROESY spectrum as a reference: - First, do the peak picking of a few
Posted - Mon May 13, 2013 5:55 am
Demers, Jean-Philippe
jpdemethyl
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Help for backbone assignment using NCACO and NCOCA
Hi All, I am new to Sparky. I am trying to use NCO, NCACO and NCOCA spectra to get assignment for protein structure. If anybody has proper instruction to do
Posted - Mon May 13, 2013 5:55 am
Yala
jarmadushanka
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Re: Regarding processing problem of 2D TOCSY ucsf in sparky
Hi, Additionally, please post the output of ucsfdata program, which you can find in the bin folder of Sparky installation. Something like, ucsfdata TOCSY.ucsf
Posted - Fri May 10, 2013 5:19 pm
Mandar Naik
mantrinaik
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Message History

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2013 1 5 2 2 10
2012 1 12 1 12 5 1 11 10 1 7
2011 6 6 8 5 6 3
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2005 1 1 3 20 13 23

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